I have been attending a reading group on visualization tools for the last few weeks. This is a unique multi-institution group that meets over web-conferencing at 4 PM EST / 1 PM PST on Fridays. It includes a diverse bunch of participants including non-academic researchers.
Every week we vote on and discuss a range of topics related to building tools for visualizing data.
This week, it was my turn to lead a discussion on the Lumiere paper. This is the research responsible for the now retired Clippy Office assistant. I also noticed a strong ISP presence in the references section as the paper focuses on Bayesian user modeling.
During the discussion, we talked about how we can offer help to use vis tools better. Here are my slides from it:
Eric Horvitz, Jack Breese, David Heckerman, David Hovel, and Koos Rommelse. 1998. The lumière project: Bayesian user modeling for inferring the goals and needs of software users. In Proceedings of the Fourteenth conference on Uncertainty in artificial intelligence (UAI’98), Gregory F. Cooper and Serafín Moral (Eds.). Morgan Kaufmann Publishers Inc., San Francisco, CA, USA, 256-265.
Justin Matejka, Wei Li, Tovi Grossman, and George Fitzmaurice. 2009. CommunityCommands: command recommendations for software applications. In Proceedings of the 22nd annual ACM symposium on User interface software and technology. ACM, New York, NY, USA, 193-202.
I participated in the PennApps hackathon in Philadelphia this weekend. While most of the city was struck with a bad snow storm, a group of hackers holed up inside the Penn engineering buildings to work on some cool hacks. My team consisting of three other hackers: Daniel, Alex and Madhur, decided to work on an app that could predict blood glucose levels of diabetes patients by building machine learning models.
We used the OneTouch Reveal API to gather some data provided by the Johnson & Johnson’s company. They are the manufacturers of OneTouch glucose monitors for diabetes patients. They also give their patients an app for tagging events like exercise (light, moderate, heavy etc.), when they eat food and use insulin (different kinds – fast acting, before/after meals etc.). Our team thought that it might be a good idea to hack on this dataset to find out whether we could predict patients’ glucose levels without them having them to punch a hole in their fingers. A real world use case for this app would be to alert a patient when we predicted unusual glucose levels or have them do an actual blood test when the confidence on our predictions falls low.
We observed mixed results for the patients in our dataset. We did reasonably well for those with more data, but others had very few data points to make good predictions. We also saw that our predictions became more precise as we considered more data. Another issue was that the OneTouch API did not give sufficient information about food and exercise events for any of the patients – mostly without additional event tagging. As a result, our models were not influenced much by them.
We believe that in the near future, it would be common for the patients to have such monitors communicate with other wearable sensors such as smart watches. Such systems would be able to provide ample information about one’s physical activity etc., to make more meaningful predictions possible. Here’s a video demonstrating our proof-of-concept:
Update: We received the best student paper award for our paper at JURIX’15!
In an earlier post, I talked about my work on Natural Language Processing in the clinical domain. The main idea behind the project is to enable domain experts to build machine learning models for analyzing text. We do this by designing usable tools for NLP without really having the need to send datasets to machine learning experts or understanding the inner working details of the algorithms. The post also features a demo video of the prototype tool that we have built.
I was presenting this work at my program’s bi-weekly meetings where Jaromir, a fellow ISP graduate student, pointed out that such an approach could be useful for his work as well. Jaromir also holds a degree in Law and works on building AI systems for legal applications. As a result, we ended up collaborating on a project on using the approach for statutory analysis. While, the main topic of discussion in the project is on the framework in which a human experts cooperate with a machine learning text classification algorithm, we also ended up augmenting our approach with a new way of capturing and re-using knowledge. In our tool datasets and models are treated separately and our not tied together. So, if you were building a classification model for say statutes from the state of Alaska, when you need to analyze laws from Kansas you need not start from scratch. This allows us to be in a better starting place in terms of all the performance measures and build a model using fewer training examples.
Jaromír Šavelka, Gaurav Trivedi, and Kevin Ashley. 2015. Applying an Interactive Machine Learning Approach to Statutory Analysis. In Proceedings of the 28th International Conference on Legal Knowledge and Information Systems (JURIX ’15). Braga, Portugal. [PDF] – Awarded the Best Student Paper (Top 0.01%).
Update: Here’s our full paper announcement with source-code release…
I am working on a project to support the use of Natural Language Processing in the clinical domain. Modern NLP systems often make use of machine learning techniques. However, physicians and other clinicians, who are interested in analyzing clinical records, may be unfamiliar with these methods. Our project aims to enable such domain experts make use of Natural Language Processing using a point-and-click interface . It combines novel text-visualizations to help its users make sense of NLP results, revise models and understand changes between revisions. It allows them to make any necessary corrections to computed results, thus forming a feedback loop and helping improve the accuracy of the models.
Here’s the walk-through video of the prototype tool that we have built:
At this point we are redesigning some portions of our tool based on feedback from a formative user study with physicians and clinical researchers. Our next step would be to conduct an empirical evaluation of the tool to test our hypotheses about its design goals.
Gaurav Trivedi. 2015. Clinical Text Analysis Using Interactive Natural Language Processing. In Proceedings of the 20th International Conference on Intelligent User Interfaces Companion (IUI Companion ’15). ACM, New York, NY, USA, 113-116. DOI 10.1145/2732158.2732162 [Presentation] [PDF]
Gaurav Trivedi, Phuong Pham, Wendy Chapman, Rebecca Hwa, Janyce Wiebe, Harry Hochheiser. 2015. An Interactive Tool for Natural Language Processing on Clinical Text. Presented at 4th Workshop on Visual Text Analytics (IUI TextVis 2015), Atlanta. http://vialab.science.uoit.ca/textvis2015/ [PDF]
Gaurav Trivedi, Phuong Pham, Wendy Chapman, Rebecca Hwa, Janyce Wiebe, and Harry Hochheiser. 2015. Bridging the Natural Language Processing Gap: An Interactive Clinical Text Review Tool. Poster presented at the 2015 AMIA Summit on Clinical Research Informatics (CRI 2015). San Francisco. March 2015. [Poster][Abstract]
I recently prepared a deck of slides for my machine learning course. In the presentation, I talk about some of the recently proposed methods on learning from multiple annotators. In these methods we do not assume the labels that we get from the annotators to be the ground truth, as we do in traditional machine learning, but try to find “truth” from noisy data.
There are two main directions of work in this area. One focuses on finding the consensus labels first and then do traditional learning, while the other approach is to learn a consensus model directly. In the second approach, we may estimate the consensus labels during the process of building a classifier itself.
Here are the slides for the presentation. I would be happy to receive your comments and suggestions.
After last week‘s discussion with tshirtman about making making Kivy apps more accessible, I spent this week exploring the accessibility options on the devices I own. The idea was to investigate and plan a set of common features that we could implement for Kivy.
I ended up playing with all the settings I that could find under the accessibility menus on an Android phone and a Macbook. I will soon repeat this exercise with an iPhone as well.
In comparison to my Galaxy running Android 4.4.2, these features were easier to use and more responsive to interact with on my Mac 10.9. Even the tutorials were simpler to follow and avoided statements like:
“When this feature is on, the response time could be slowed down in Phone, Calculator and other apps.”
I will keep myrantings aside for now and would instead like to focus on how we could support these features within Kivy apps. Following Apple’s way of organizing these features, you can group accessibility features into three broad categories:
Seeing: This includes display settings such as colors and contrast, making text larger and zooming the screen. A lot of these settings come free of cost to the app developers. However, an important feature in this category includes the screen reader app (Example: VoiceOver and TalkBack). This is the main area of interest to us as the onus of making this feature work correctly rests with us and the app developers. I will get back to this after we finish classifying the features.
Hearing: We must make sure all our alert widgets in Kivy are accompanied by visual cues (such as a screen flash) along with audio indicators. Another feature that might be of interest to us would be to ensure that we provide a subtitles option along in our video player widget.
Interacting: It includes features like the assistant menu on Android to provide easy access to a limited number of commonly accessed functions. Most of these features are again managed and controlled by the operating systems themselves. Apart from a few design choices to make sure that app doesn’t interfere with their functions, there’s nothing that the app developers have to do to support them.
So the most important missing piece in the Kivy framework is to provide support to the screen-reading apps. These apps are designed to provide spoken feedback to what the users select (touch or point) and activate. For example if I hover over a menu-item or select a button on the screen, the app must describe what it is and also say what is does, if possible.
While settings such as zoom, larger font-sizes etc. are already taken care of by the frameworks that Kivy builds upon, we must provide explicit support for the screen readers. Here’s an example of an hello world kivy app and how it is seen by the screen-readers. There is nothing apart from the main windows buttons, i.e. “Close”, “Minimize” and “Zoom” that is available to the VoiceOver program to describe:
The main challenge here is that none of the Kivy widgets are selectable at this point. Not only that makes it difficult to use them with screen-readers but it is also not possible to navigate them using a keyboard. We must provide a screen-reader support along with our feature on providing focus support for Kivy widgets.
Along with on_focus we must send a descriptive feedback that the screen-readers as a description about the widget. While most of the native OS UI elements have such content descriptors already defined, our kivy widgets lack such information. We must make an effort to make sure that common widgets such as text-inputs, select options etc. have a description consistent with the one natively provided by the platform.
So a major portion of this implementation must be dealt within Kivy itself. While we have previously adopted an approach for implementing the lowest common set of features in other Plyer facades, it would be a good idea to implement the content descriptors (or accessibility attributes) in a way that it covers all our target platforms. Plyer could then take on from there to make the the platform specific calls to support the native screen reading apps. We would need to provide a mechanism to transform these attributes into a form relevant on these platforms separately. We could safely ignore the extra set of attributes at this point.
In this post I have only outlined the first steps that we need to take for making Kivy apps more accessible. I will work on figuring out the finer details about implementing them in the coming weeks. Hopefully this would help in triggering off a meaningful discussion within the community and we can have a chance to listen to other opinions on this as well.